PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G08390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 377aa    MW: 41742.1 Da    PI: 4.6603
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G08390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.34.4e-21101312128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       +G+rF+P+ +e+v++y+ +  ++ + +    i+ +d+y +eP+dL +     +++++ + +fF++ ++ +    + +ra+  g+W ++ + k+
  LPERR12G08390.1  10 EAGYRFSPSPQEVVTFYIPRLFANITDPY---IHIADVYAAEPKDLARdfapVASSSNGDRWFFTQCKRVK---GKVSRAAGGGTWVSQSS-KD 96 
                      68*******************99998666...9999**********8546653333444667888888865...4799999******8865.99 PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++++g+++g  k + f kg +++  +tdW+m+ey+l
  LPERR12G08390.1  97 IKNREGKKIGETKNFRFKKGANKE--NTDWLMEEYHL 131
                      ***9**************887777..9********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-237150IPR003441NAC domain
PROSITE profilePS5100526.9969150IPR003441NAC domain
PfamPF023652.9E-1311131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MASNLDLLLE AGYRFSPSPQ EVVTFYIPRL FANITDPYIH IADVYAAEPK DLARDFAPVA  60
SSSNGDRWFF TQCKRVKGKV SRAAGGGTWV SQSSKDIKNR EGKKIGETKN FRFKKGANKE  120
NTDWLMEEYH LVGGKQAGDV EPVVCRIYVS PRAAPDSAAH QESAALPPRP QELAPPLAPA  180
PAMITKQQQQ AAPLKRPAVS ASVAETLPCS KKMRRPVSAK RVMAPPPPLP MPTYLIDPFK  240
QPPQPLPQEN SNQKLMMDAA PFLDKSGAER DDDVDDFAEI EQQIFSYGEE IAGRVALAPT  300
VKQTIAPNDD EPHEFCDEDM DELMKLMDDK IEEAADAGNG TEGDDMGEFA RFLEDGLLSN  360
DDKSLDQFEK EFLKVFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619212.13e-79PREDICTED: vegetative cell wall protein gp1-like
TrEMBLA0A0D9XYT30.0A0A0D9XYT3_9ORYZ; Uncharacterized protein
STRINGBGIOSGA037277-PA2e-79(Oryza sativa Indica Group)
STRINGORGLA12G0092700.13e-79(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-13NAC domain containing protein 90